Difference between revisions of "CavitOmiX"
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[[File:Cavitomix.png|400px|center]] | [[File:Cavitomix.png|400px|center]] | ||
| − | + | ==CavitOmiX 1.0== | |
| + | [https://innophore.com/cavitomix CavitOmiX]. | ||
| + | * Predict protein structures within seconds for any protein sequence using [OpenFold by NVIDIA BioNeMo] (coming soon!) and [ESMFold by Meta] | ||
| + | * [AlphaFold2] models can be retrieved via UniProt ID | ||
| + | * Cavities can be calculated for molecules loaded in PyMOL | ||
| + | * Analyze the hydrophobicity of your cavities | ||
| + | * Protein structures can be retrieved from the [PDB] using the PDB code | ||
| + | * Mix and match all the above in a single entry, align the structures and get an quick overview | ||
| + | * Cavity calculation setting scan be changed | ||
| + | * Each [https://innophore.com Cavity] is an "residue" entry, each cavity point is an "atom", so you can select, remove, copy, represet cavities to your liking! | ||
| + | |||
| + | ==Overview== | ||
| + | |||
| + | |||
| + | * | ||
| + | * | ||
| + | |||
| + | |||
| + | [[File:.png|500px|thumb|center|CavitOmiX PyMOL plugin empowered by NVIDIA BioNeMo ]] | ||
| + | |||
| + | ==References== | ||
| + | |||
| + | # [https://innophore.com Innophore GmbH] | ||
| + | # [NVIDIA BioNeMo] | ||
| + | |||
| + | [[Category:Surfaces and Voids|CavitOmiX]] | ||
| + | [[Category:Biochemical_Properties]] | ||
[[Category:Plugins]] | [[Category:Plugins]] | ||
[[Category:Pymol-script-repo]] | [[Category:Pymol-script-repo]] | ||
[[Category:NVIDIA]] | [[Category:NVIDIA]] | ||
[[Category:BioNeMo]] | [[Category:BioNeMo]] | ||
Revision as of 08:04, 23 December 2022
| Type | PyMOL Plugin |
|---|---|
| Download | https://innophore.com/cavitomix |
| Author(s) | Georg Steinkellner, Christian C. Gruber, Karl Gruber*, and the Innophore Team |
| License | |
| https://innophore.com | |
CavitOmiX 1.0
- Predict protein structures within seconds for any protein sequence using [OpenFold by NVIDIA BioNeMo] (coming soon!) and [ESMFold by Meta]
- [AlphaFold2] models can be retrieved via UniProt ID
- Cavities can be calculated for molecules loaded in PyMOL
- Analyze the hydrophobicity of your cavities
- Protein structures can be retrieved from the [PDB] using the PDB code
- Mix and match all the above in a single entry, align the structures and get an quick overview
- Cavity calculation setting scan be changed
- Each Cavity is an "residue" entry, each cavity point is an "atom", so you can select, remove, copy, represet cavities to your liking!
Overview
File:.png
CavitOmiX PyMOL plugin empowered by NVIDIA BioNeMo
References
- Innophore GmbH
- [NVIDIA BioNeMo]