Difference between revisions of "Category:ObjSel Scripts"

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* [[ConnectedCloud]] — Find connected clouds of objects in PyMOL
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* [[ConnectedCloud]]  
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* [[Color Objects]] — Colors all objects differently (Python script).
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::Find connected clouds of objects in PyMOL
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* [[FindSeq]] — Find sequence or regular expression of amino acids in a protein.
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* [[Color Objects]]
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* [[Get Coordinates I]] — Retrieves atom coordinates as Python objects.
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:: Colors all objects differently (Python script).
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* [[Get Coordinates II]] — Retrieves atom coordinates as Python array (list object).
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* [[FindSeq]]
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* [[grepsel]] — Make named selections using regular expressions (protein sequence).
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:: Find sequence or regular expression of amino acids in a protein.
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* [[List Selection]] — Prints a list of all residues in a selection (both Python and .pml).
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* [[Get Coordinates I]]
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* [[List Colors]] — Lists the color of all residues in a selection (both Python and .pml).
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:: Retrieves atom coordinates as Python objects.
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* [[List Secondary Structures]] — Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
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* [[Get Coordinates II]]
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* [[Selection Exists]] — Python method that returns true if a selection of a given name exists.
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:: Retrieves atom coordinates as Python array (list object).
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* [[Split Movement]] — Moves two parts of one object into different directions.
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* [[grepsel]]  
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* [[toGroup]] — Convert a multistate object into a group of single state objects.
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:: Make named selections using regular expressions (protein sequence).
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* [[Zero_residues]] — Renumber residues such that the first residue is 0.  Useful for alignments.
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* [[List Selection]]
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:: Prints a list of all residues in a selection (both Python and .pml).
 +
* [[List Colors]]
 +
:: Lists the color of all residues in a selection (both Python and .pml).
 +
* [[List Secondary Structures]]
 +
:: Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
 +
* [[Selection Exists]]
 +
:: Python method that returns true if a selection of a given name exists.
 +
* [[Split Movement]]
 +
:: Moves two parts of one object into different directions.
 +
* [[toGroup]]
 +
:: Convert a multistate object into a group of single state objects.
 +
* [[Zero_residues]]
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:: Renumber residues such that the first residue is 0.  Useful for alignments.
  
 
[[Category:Script_Library]]
 
[[Category:Script_Library]]

Revision as of 18:29, 22 May 2009

Find connected clouds of objects in PyMOL
Colors all objects differently (Python script).
Find sequence or regular expression of amino acids in a protein.
Retrieves atom coordinates as Python objects.
Retrieves atom coordinates as Python array (list object).
Make named selections using regular expressions (protein sequence).
Prints a list of all residues in a selection (both Python and .pml).
Lists the color of all residues in a selection (both Python and .pml).
Secondary structures (both predefined and those calculated with the 'dss' command) can be exported as a long string ('HHHHLLLLSSS').
Python method that returns true if a selection of a given name exists.
Moves two parts of one object into different directions.
Convert a multistate object into a group of single state objects.
Renumber residues such that the first residue is 0. Useful for alignments.
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