Bnitools

From PyMOLWiki
Revision as of 04:26, 20 April 2016 by Steinkeg (talk | contribs)
Jump to: navigation, search
Type PyMOL Plugin
Download plugins/bnitools.py
Author(s) Georg Steinkellner
License BSD
This code has been put under version control in the project Pymol-script-repo


Description

The BNI (Beyond Normal Interaction)- Tools is a plug in for PyMOL which adds additional functionalities and presets to the PyMOL GUI.

Functions

If there are more than one function, you could list them here.

  • Make a dot
    Write under same dot

Example of use

Here you can write a link to the protein in the example
http://www.proteopedia.org/wiki/index.php/3ig7

Here you write some example of use. Try to make examples, that anyone can access right away.
Do this by fetching proteins, and if you need other example files, but them in: Pymol-script-repo/files_for_examples

import colorbydisplacement

fetch 1HP1, async=0
fetch 1HPU, async=0
 
hide everything
### Select asymmetric units from pdb file
create O5NT, /1HP1//A
create C5NT, /1HPU//C
delete 1HP1
delete 1HPU
 
show cartoon, O5NT
show cartoon, C5NT

ColorByDisplacementAll O5NT, C5NT, super1=resi 26-355, super2=resi 26-355, doColor=t, doAlign=t

References

If you have used a particular article or figure to get inspiration to your script, then make a reference.