Difference between revisions of "Bnitools"

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|license  = BSD
 
|license  = BSD
 
}}
 
}}
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= Template for a new page =
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The following sections, can for example be copied to a new page.<br>
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You can find tips for formatting a mediawiki page here: [http://www.mediawiki.org/wiki/Help:Formatting Help:Formatting]
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 +
== Introduction ==
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A little section about what the script can do, and maybe why it has been developed and under which protein discipline it is particularly useful.<br>
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Make the info box from [[Template:Infobox script-repo]].
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=== Functions ===
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If there are more than one function, you could list them here.
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* Make a dot
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*: Write under same dot
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== Example of use ==
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Here you can write a link to the protein in the example<br>
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http://www.proteopedia.org/wiki/index.php/3ig7 <br>
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Here you write some example of use. Try to make examples, that anyone can access right away.<br>
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Do this by fetching proteins, and if you need other example files, but them in: '''Pymol-script-repo/files_for_examples'''
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<syntaxhighlight lang="python">
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import colorbydisplacement
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fetch 1HP1, async=0
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fetch 1HPU, async=0
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hide everything
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### Select asymmetric units from pdb file
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create O5NT, /1HP1//A
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create C5NT, /1HPU//C
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delete 1HP1
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delete 1HPU
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show cartoon, O5NT
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show cartoon, C5NT
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ColorByDisplacementAll O5NT, C5NT, super1=resi 26-355, super2=resi 26-355, doColor=t, doAlign=t
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</syntaxhighlight>
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== References ==
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If you have used a particular article or figure to get inspiration to your script, then make a reference.
 +
 +
* ''Title of reference''. Author name. '''Journal name'''. Vol 08/12/2012, p. 54, fig. 5 [http://dx.doi.org/10.1016/0301-0104(89)87019-3  doi:10.1016/0301-0104(89)87019-3]

Revision as of 04:19, 20 April 2016

Type PyMOL Plugin
Download plugins/bnitools.py
Author(s) Georg Steinkellner
License BSD
This code has been put under version control in the project Pymol-script-repo

Template for a new page

The following sections, can for example be copied to a new page.
You can find tips for formatting a mediawiki page here: Help:Formatting

Introduction

A little section about what the script can do, and maybe why it has been developed and under which protein discipline it is particularly useful.
Make the info box from Template:Infobox script-repo.

Functions

If there are more than one function, you could list them here.

  • Make a dot
    Write under same dot

Example of use

Here you can write a link to the protein in the example
http://www.proteopedia.org/wiki/index.php/3ig7

Here you write some example of use. Try to make examples, that anyone can access right away.
Do this by fetching proteins, and if you need other example files, but them in: Pymol-script-repo/files_for_examples

import colorbydisplacement

fetch 1HP1, async=0
fetch 1HPU, async=0
 
hide everything
### Select asymmetric units from pdb file
create O5NT, /1HP1//A
create C5NT, /1HPU//C
delete 1HP1
delete 1HPU
 
show cartoon, O5NT
show cartoon, C5NT

ColorByDisplacementAll O5NT, C5NT, super1=resi 26-355, super2=resi 26-355, doColor=t, doAlign=t

References

If you have used a particular article or figure to get inspiration to your script, then make a reference.