Difference between revisions of "All states"
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==Example== | ==Example== | ||
<source lang="python"> | <source lang="python"> | ||
| − | + | # fetch a PDB and show it in multiple states; this one | |
| + | # line does the work of the next 6 lines. | ||
| + | fetch 1nmr | ||
| + | |||
| + | # this is older code, use the above code which is newer | ||
| + | import urllib2 | ||
| + | pdbCode = '1BRV' | ||
| + | pdbUrl = 'http://www.rcsb.org/pdb/downloadFile.do?fileFormat=pdb&compression=NO&structureId='+pdbCode | ||
| + | pdbFile = urllib2.urlopen(pdbUrl) | ||
| + | pdbContent = pdbFile.read() | ||
| + | cmd.read_pdbstr(pdbContent, pdbCode) | ||
| + | |||
set all_states, on | set all_states, on | ||
</source> | </source> | ||
| + | |||
| + | This shows the effect of turning on/off the '''all_states''' setting used with the script above. | ||
| + | <gallery> | ||
| + | Image:All_states_on.png|set all_states, on | ||
| + | Image:All_states_off.png|set all_states, off | ||
| + | </gallery> | ||
| + | |||
| + | == User Notes == | ||
| + | * There was an error with importing ensembles of ensembles files (complex MOL2 files) before revision 3541. If you experience this problem, update to 3541 or later. | ||
| + | |||
| + | == See Also == | ||
| + | [[Split_States]] | ||
| + | |||
| + | [[Category:Settings|All states]] | ||
| + | [[Category:States]] | ||
Latest revision as of 08:54, 19 January 2009
Overview
When set "on", this setting causes PyMOL to display all states or in NMR jargon: all the models in the ensemble. The 'default' behavior (OFF) can be overridden by placing the "set all_states, on" statement into your '.pymolrc' file, located in your login directory (under all flavors of unix).
Syntax
set all_states, on
set all_states, off
Example
# fetch a PDB and show it in multiple states; this one
# line does the work of the next 6 lines.
fetch 1nmr
# this is older code, use the above code which is newer
import urllib2
pdbCode = '1BRV'
pdbUrl = 'http://www.rcsb.org/pdb/downloadFile.do?fileFormat=pdb&compression=NO&structureId='+pdbCode
pdbFile = urllib2.urlopen(pdbUrl)
pdbContent = pdbFile.read()
cmd.read_pdbstr(pdbContent, pdbCode)
set all_states, on
This shows the effect of turning on/off the all_states setting used with the script above.
set all_states, on
set all_states, off
User Notes
- There was an error with importing ensembles of ensembles files (complex MOL2 files) before revision 3541. If you experience this problem, update to 3541 or later.