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===Examples=== optAlign 1cll and n. CA and i. 4-20+30-60, 1ggz and n. CA and i. 4-20+30-60 optAlign 1kao and n. CA and i. 20-50, 1ctq and n. CA and i. 20-50 <gallery> Image:OptAlign1.png|1cll and 1ggz loaded Image:OptAlign2.png|1cll and 1ggz aligned to residues 5-50+55-80 shown in red </gallery> Kabsch can also align hetero-atoms: <source lang="python"> load 1cll.pdb load 1ggz.pdb optAlign 1cll and e. CA, 1ggz and e. CA </source> The above aligns the 4 Calciums in each structure.
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