Editing Talk:TOPTOC (section)

== New Table ==
Here's the code for a new table for this page.  This page is quite popular and needs to be cleaned up...alot.  Feel free to make changes to the main TOPTOC as needed.

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{| style="color:#CC9752; padding: 10px; background: transparent;"
!  style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left;" colspan="2" | Installation, Configuration & Learning
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# '''[[:Category:Installation|Installation]]'''
## [[Linux_Install|Linux]]
## [[MAC_Install|MAC]]
## [[Windows_Install|Windows]]
# '''[[:Category:Stereo 3D Display|Stereo 3D Display]]'''
## [[Linux XFree86 Configuration]]


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# '''[[:Category:Using Pymol|Using PyMol]]'''
## '''[[:Category:Launching|Launching]]'''
### [[Launching PyMOL|Launching PyMOL]]
### [[Command_Line_Options|Command Line Options]]
### [[Launching_From_a_Script|Launching From a Script]]
## [[Mouse_Controls|Mouse Controls]]
## '''[[:Category:Objects and Selections|Objects and Selections]]'''
### '''[[:Category:Working with Objects|Working with Objects]]'''
### '''[[:Category:Working with Selections|Working with Selections]]'''
### '''[[:Category:Selector_Quick_Reference|Selector Quick Reference]]'''
#### [[Single-word Selectors|Single-word Selectors]]
#### [[Property Selectors|Property Selectors]]
#### [[Selection Algebra|Selection Algebra]]
#### [[Selection Macros|Selection Macros]]
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{| style="color:#CC9752; padding: 10px; background: transparent;"
!style="background:transparent; font-size: 150%; text-decoration:underline; vertical-align:top; text-align:left;"  colspan="2" |  Commands, Representations & Settings
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# '''[[:Category:Commands|PyMOL Commands]]'''
# '''[[:Category:Settings|Settings (Documented)]]'''
## [[Settings|All]]


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# '''[[:Category:Representations|Representations]]'''
## [[Lines|Lines]]
## [[Sticks|Sticks]]
## [[Ball_and_Stick|Ball and Sticks]]
## [[Cartoon|Cartoon]]
## [[Surface|Surface]]
## [[Mesh|Mesh]]
## [[Spheres|Spheres]]
## [[Dots|Dots]]
# '''[[:Category:Coloring|Coloring]]'''
## [[Color|Color]]
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{| style="color:#CC9752; padding: 10px; background: transparent;"
! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left;" colspan="2" | Physico-chemical Modeling
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# '''[[:Category:Biochemical_Properties|Biochemical Properties]]'''
## [[Displaying Biochemical Properties|Displaying biochemical properties]]
## [[Surfaces_and_Voids|Surfaces and Voids]]


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# [[Modeling_and_Editing_Structures|Modeling and editing structures]]
## [[Editing atoms|Editing Atoms]]
## [[Molecular Sculpting|Molecular sculpting]]
## [[Homology Modeling|Homology modeling]]
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{| style="color:#CC9752; padding: 10px; background: transparent;"
! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left; vertical-align:top;" colspan="2" | Images & Movies
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# '''[[:Category:Image Manipulation|Image Manipulation]]'''
## [[Label|Labels]]
## Photoshop/GIMP
## [[Stereo_Ray|Stereo Figures]]
## [[Publication Quality Images|Publication-quality images]]
## [[PovRay|PovRay]]
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# [[Making_Movies|Making Movies]]
## [[Software_Codecs|Codecs]]


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{| style="color:#CC9752; padding: 10px; background: transparent;"
! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left;" colspan="2" | Extending, Embedding & Scripting
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# [[Scripting|Scripting]]
## [[Example Scripts|Example Scripts]]
## '''[[:Category:Script Library|Script Library]]'''
# '''[[:Category:Plugins|Plugins]]'''
## '''[[:Category:Electrostatics|Electrostatics and energy minimization.]]'''
### [[APBS|APBS Plugin]]
### [[Protein_contact_potential]]
## [http://www.rubor.de/bioinf/pymol_extensions.html rtools]
## [[Plugins_Tutorial|Tutorial on writing plugins]]
## '''[[:Category:Plugins Others| Others]]'''
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# High-Level Applications
## Crystallography Applications
### Symmetry|Symmetry
### Electron Density
## NMR Applications
### Working with Structure Families
## '''[[:Category:Structure_Alignment|Superimposition and RMSD]]'''
### NMR Restraints and Analysis
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{| style="color:#CC9752; padding: 10px; background: transparent;"
! style="background:transparent; font-size: 150%; text-decoration:underline; text-align:left; vertical-align:top;" colspan="2"|  Third Party Applications
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# [[O]]
# [[SURFNET]]


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# [[Python_Integration|Python Integration]]
# '''[[:Category:PyMol_Integration|PyMol_Integration]]'''
## [[Nuccyl|Nuccyl]] -- Nuccyl is a great PyMol extension
## [[CASTp|CASTp]] -- Binding and Active site prediction
## [[CCTBX|CCTBX]] -- Computational Crystallography Toolbox
## [[ProMOL]]
## [[S2S]]
## '''[[:Category:PyMol_Integration Arbitrary_Graphics_Objects|Arbitrary_Graphics_Objects]]'''
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