Editing Command Line Options (section)

= Command Line Options =

 shell> pymol --help

 PyMOL 1.8.6.0 Incentive Product
 Copyright (C) Schrodinger, LLC
 
 Usage: pymol [OPTIONS]... [FILES]... [-- CUSTOM SCRIPT ARGUMENTS]
 
 Options
 
   --help    display this help and exit
   --version display PyMOL version and exit
   --retina  use retina resolution (MacPyMOL) and set display_scale_factor=2
 
   -1        config_mouse one_button
   -2        config_mouse two_button
   -a N      alias for -A
   -A N      application configuration:
     -A1     simple viewer window          (-qxiF -X 68 -Y 100)
     -A3     internal GUI only, no splash  (-qx -X 68 -Y 100)
     -A4     used by PYMOLVIEWER           (-X 68 -Y 100)
     -A5     helper application            (-QxiICUF -X 68 -Y 100)
     -A6     full screen presentation      (-qxieICUPF)
   -b[N]     benchmark wizard
   -B        (DEPRECATED)
   -c        launch in command-line only mode for batch processing
   -C        don't terminate on Ctrl-C
   -d cmd    execute PyMOL command
   -D N      defer_builds_mode=N
   -e        full screen
   -E N      multisampling (GL_MULTISAMPLE_ARB)
   -f N      internal_feedback=N
   -F        internal_feedback=0
   -g file   save image (png) or movie (mpg)
   -G        game mode (DEPRECATED)
   -h        generic helper application (no controls, no feedback)
   -H N      window height in pixels
   -i        internal_gui=0
   -I        auto_reinitialize=1 (Mac only)
   -j        side-by-side stereo (stereo_mode=4)
   -J        cd to user's home directory
   -k        don't load pymolrc or plugins
   -K        keep alive: when running without a GUI, don't quit after the input
             is exhausted
   -l file   run python script in thread (spawn)
   -L file   load file after everything else (only if something was loaded before)
   -m        INTERNAL - do not use (mac external GUI)
   -M        force mono
   -n        INTERNAL - do not use (incentive_product=1)
   -N name   UNSUPPORTED - external gui type (default: pmg_tk) (same as -w)
   -o        disable security protections
   -O N      sphere_mode=N
   -p        read commands from STDIN
   -P        handle scenes as if the session were opened in presentation mode
   -q        supress startup message
   -Q        quiet, suppress all text output
   -r file   run python script
   -R        launch RPC Server
   -s file   log to file
   -S        force stereo
   -t N      stereo_mode=N
   -T name   UNSUPPORTED - Tcl/Tk GUI skin
   -u file   resume log file (execute existing content and append new log output)
   -U        UNSUPPORTED reuse the helper application
   -v        UNUSED
   -V N      external GUI window height in pixels
   -w name   UNSUPPORTED - external gui type (default: pmg_tk) (same as -N)
   -W N      window width in pixels
   -x        no external gui
   -X N      window x position on screen
   -y        exit on error
   -Y N      window y position on screen
   -z N      window_visible=N
   -Z N      zoom_mode=N