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AKMT Lys pred
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== Overview == Chu ''et al.'' has compiled a large information of peptides which are methylated in ''Sulfolobus Islandicus.'' The mass-spec data is available at: http://www.mcponline.org/content/15/9/2908/suppl/DC1 in * Supplemental Table S2a revisied (.xlsx, 6.5 MB) - Supplemental Table S2a revisied : mcp.M115.057778-3.xlsx * Supplemental Table S2a revisied (.xlsx, 4.8 MB) - Supplemental Table S2a revisied : mcp.M115.057778-4.xlsx The authors has tried to find correlation with amino acids in 1D, with 7 residues up and downstream to the lysines. The authors also tried to first predict secondary structure in the chain, and then find correlation. They made a weblogo figure http://weblogo.threeplusone.com with their findings. There seems to be a preference for helical structure and Glutamic acid (E), Isoleucin (I), Leucin (L) and Valine (V) seems to be dominant with 7 residues up/downstream to the methylated lysines. This script should try to make an analysis this for 3D, with residues up and downstream in angstrom distance to the residue of interest.
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