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Using

Once installed, one can perform an alignment using the following syntax:
 cealign SEL1, SEL2
where SEL1 is the first selection to align, and SEL2 is the second selection. Any PyMol selection should be valid. For example all of the following are syntactically valid:
 # align two proteins
 cealign 1ggz, 1cll

 # align residue ranges on two proteins
 cealign 1cbs and i. 6-55, 1hmt and i. 6-90

 # align certain chains on two proteins
 cealign 1OKE and c. A, 1S6N



Jason Vertrees 2007-01-11