PyMOL Wiki - Recent changes [en]

Abort

Strater — Wed, 25 Mar 2026 19:21:14 GMT

Added main function or usage of abort command. I am not sure if the previous definition (dummy function) makes sense, but I left it.

← Older revision		Revision as of 19:21, 25 March 2026
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			[[abort]] terminates execution of a PyMOL command script without executing any additional commands.

	[[Abort]] is a dummy function which returns [[:Python:None\|Python's None element]].		[[Abort]] is a dummy function which returns [[:Python:None\|Python's None element]].

Jaredsampson — Sun, 15 Mar 2026 02:29:17 GMT

EXAMPLES: typo C4->C3

← Older revision		Revision as of 02:29, 15 March 2026
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	# superimpose protA residues 10-25 and 33-46 to protB residues 22-37 and 41-54:		# superimpose protA residues 10-25 and 33-46 to protB residues 22-37 and 41-54:
	pair_fit protA///10-25+33-46/CA, protB///22-37+41-54/CA		pair_fit protA///10-25+33-46/CA, protB///22-37+41-54/CA
	# superimpose ligA atoms C1, C2, and C4 to ligB atoms C8, C4, and C10, respectively:		# superimpose ligA atoms C1, C2, and C3 to ligB atoms C8, C4, and C10, respectively:
	pair_fit ligA////C1, ligB////C8, ligA////C2, ligB////C4, ligA////C3, ligB////C10		pair_fit ligA////C1, ligB////C8, ligA////C2, ligB////C4, ligA////C3, ligB////C10
	</syntaxhighlight>		</syntaxhighlight>

Speleo3 — Thu, 12 Mar 2026 06:30:00 GMT

fix links

← Older revision		Revision as of 06:30, 12 March 2026
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	{{Infobox script-repo		{{Infobox script-repo
	\|type = script		\|type = script
	\|filename = ~~script~~/dssr_block.py		\|filename = scripts/dssr_block.py
	\|author = [[User:Speleo3\|Thomas Holder]]		\|author = [[User:Speleo3\|Thomas Holder]]
	\|license = BSD-2-Clause		\|license = BSD-2-Clause
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	This script adds the [[dssr_block]] command, which is a simple wrapper for the '''DSSR''' program and can create "block" shaped cartoons for nucleic acid bases and base pairs.		This script adds the [[dssr_block]] command, which is a simple wrapper for the '''DSSR''' program and can create "block" shaped cartoons for nucleic acid bases and base pairs.

	''Requires the '''x3dna-dssr''' executable, obtainable from ~~http~~://x3dna.org''		''Requires the '''x3dna-dssr''' executable, obtainable from https://x3dna.org''

	Instead of installing '''x3dna-dssr''' and the plugin locally, you can also use the web server at http://skmatic.x3dna.org/		Instead of installing '''x3dna-dssr''' and the plugin locally, you can also use the web server at http://skmatic.x3dna.org/

	See also the blog post by DSSR author Xiang-Jun Lu: ~~http~~://x3dna.org/highlights/dssr-base-blocks-in-pymol-interactively		See also the blog post by DSSR author Xiang-Jun Lu: https://x3dna.org/highlights/dssr-base-blocks-in-pymol-interactively

	== Recommended Setup ==		== Recommended Setup ==

Speleo3 — Thu, 12 Mar 2026 06:24:53 GMT

← Older revision		Revision as of 06:24, 12 March 2026
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	! Download		! Download
	\| {{#if: {{{filename\|}}}		\| {{#if: {{{filename\|}}}
	\| [https://raw.githubusercontent.com/Pymol-Scripts/Pymol-script-repo/master/{{{filename}}} {{{filename}}}]		\| [https://raw.githubusercontent.com/Pymol-Scripts/Pymol-script-repo/refs/heads/master/{{{filename}}} {{{filename}}}]
	\| {{{download\|}}}		\| {{{download\|}}}
	}}		}}