https://pymolwiki.org/api.php?action=feedcontributions&user=VitoCalderone&feedformat=atomPyMOLWiki - User contributions [en]2024-03-29T11:49:39ZUser contributionsMediaWiki 1.35.7https://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13319CCTBX-fedora322020-09-08T10:19:51Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: <br />
./install --prefix=/usr/local<br />
<br />
<br />
3. Install latest Miniconda3 in /usr/local from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment:<br />
<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt qt glm qt catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: <br />
source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
<br />
7. Compile PyMOL with: <br />
cctbx.python setup.py install<br />
<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: <br />
cctbx.python setup.py install<br />
<br />
<br />
9. Run PyMOL with: <br />
cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13307CCTBX-fedora322020-06-20T08:46:08Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: <br />
./install --prefix=/usr/local<br />
<br />
<br />
3. Install latest Miniconda3 in /usr/local from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment:<br />
<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt qt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: <br />
source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
<br />
7. Compile PyMOL with: <br />
cctbx.python setup.py install<br />
<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: <br />
cctbx.python setup.py install<br />
<br />
<br />
9. Run PyMOL with: <br />
cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13292CCTBX-fedora322020-05-11T18:44:03Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: <br />
./install --prefix=/usr/local<br />
<br />
<br />
3. Install latest Miniconda3 in /usr/local from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment:<br />
<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: <br />
source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
<br />
7. Compile PyMOL with: <br />
cctbx.python setup.py install<br />
<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: <br />
cctbx.python setup.py install<br />
<br />
<br />
9. Run PyMOL with: <br />
cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13291CCTBX-fedora322020-05-11T18:40:30Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: <br />
./install --prefix=/usr/local<br />
<br />
<br />
3. Install latest Miniconda3 in /usr/local from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment:<br />
<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13290CCTBX-fedora322020-05-11T18:37:46Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13289CCTBX-fedora322020-05-11T16:13:57Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
==> /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13288CCTBX-fedora322020-05-11T16:13:14Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
== /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13287CCTBX-fedora322020-05-11T16:12:55Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
<br />
== /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13286CCTBX-fedora322020-05-11T16:12:38Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
<br />
== /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf ==<br />
<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13285CCTBX-fedora322020-05-11T16:12:10Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
<br />
== Headline text ==<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13284CCTBX-fedora322020-05-11T16:11:45Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
== /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13283CCTBX-fedora322020-05-11T16:11:22Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
== <br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13282CCTBX-fedora322020-05-11T16:10:54Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
<br />
== /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13281CCTBX-fedora322020-05-11T16:10:22Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
== <br />
== /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
==<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13280CCTBX-fedora322020-05-11T16:09:48Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
== /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13279CCTBX-fedora322020-05-11T16:09:21Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
== /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
== /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13278CCTBX-fedora322020-05-11T16:08:48Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
<br />
== /usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
==<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13277CCTBX-fedora322020-05-11T16:06:24Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
1. Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
2. Install cctbx: ./install --prefix=/usr/local<br />
<br />
3. Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
4. Install pymol dependencies with conda into the cctbx environment :<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
5. Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
6. Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
7. Compile PyMOL with: cctbx.python setup.py install<br />
<br />
8. Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
9. Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13276CCTBX-fedora322020-05-11T16:05:26Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
<br />
Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
Install cctbx: ./install --prefix=/usr/local<br />
<br />
Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
Install pymol dependencies with conda into the cctbx environment :<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
Compile PyMOL with: cctbx.python setup.py install<br />
<br />
Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13275CCTBX-fedora322020-05-11T16:03:57Z<p>VitoCalderone: </p>
<hr />
<div><br />
''' This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. '''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
Install cctbx: ./install --prefix=/usr/local<br />
<br />
Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
Install pymol dependencies with conda into the cctbx environment :<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
Compile PyMOL with: cctbx.python setup.py install<br />
<br />
Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13274CCTBX-fedora322020-05-11T16:03:27Z<p>VitoCalderone: </p>
<hr />
<div><br />
'''== This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. =='''<br />
<br />
----<br />
<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
Install cctbx: ./install --prefix=/usr/local<br />
<br />
Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
Install pymol dependencies with conda into the cctbx environment :<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
Compile PyMOL with: cctbx.python setup.py install<br />
<br />
Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13273CCTBX-fedora322020-05-11T16:01:00Z<p>VitoCalderone: </p>
<hr />
<div>This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed.<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
Open-Source PyMOL<br />
<br />
Linux<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
Install cctbx: ./install --prefix=/usr/local<br />
<br />
Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
Install pymol dependencies with conda into the cctbx environment :<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
<br />
Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
Compile PyMOL with: cctbx.python setup.py install (see Linux Install for details)<br />
<br />
Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13272CCTBX-fedora322020-05-11T16:00:14Z<p>VitoCalderone: </p>
<hr />
<div>This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed.<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
Open-Source PyMOL<br />
<br />
Linux<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
Download cctbx from http://cci.lbl.gov/cctbx_build<br />
<br />
Install cctbx: ./install --prefix=/usr/local<br />
<br />
Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
<br />
Install pymol dependencies with conda into the cctbx environment :<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
<br />
Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
<br />
Compile PyMOL with: cctbx.python setup.py install (see Linux Install for details)<br />
<br />
Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
<br />
Run PyMOL with: cctbx.python -m pymol</div>VitoCalderonehttps://pymolwiki.org/index.php?title=CCTBX-fedora32&diff=13271CCTBX-fedora322020-05-11T15:59:31Z<p>VitoCalderone: Created page with "This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed. CCTBX and PyMOL need to..."</p>
<hr />
<div>This page describes how to use the Computational Crystallography Toolbox (cctbx) with open-source PyMOL on Fedora 32 which has python3 only installed.<br />
<br />
CCTBX and PyMOL need to be compiled with the same Python distribution, otherwise they won't be compatible.<br />
<br />
Open-Source PyMOL<br />
<br />
Linux<br />
Confirmed procedure to get this working on Linux Fedora 32 with PyQt5 and CCTBX build dev-2130, which is based on conda:<br />
<br />
Download cctbx from http://cci.lbl.gov/cctbx_build<br />
Install cctbx: ./install --prefix=/usr/local<br />
Install latest Miniconda3 from https://repo.anaconda.com/miniconda<br />
Install pymol dependencies with conda into the cctbx environment :<br />
/usr/local/miniconda3/bin/conda install -p /usr/local/cctbx-dev-2130/conda_base -c conda-forge glew freeglut libpng freetype libxml2 msgpack-c pyqt glm catch2 libnetcdf<br />
Download mmtf-cpp from https://github.com/rcsb/mmtf-cpp and copy the content of the include subdirectory to /usr/local/cctbx-dev-2130/conda_base/include<br />
Activate cctbx: source /usr/local/cctbx-dev-2130/cctbx_env.csh<br />
Compile PyMOL with: cctbx.python setup.py install (see Linux Install for details)<br />
Install Pmw from https://github.com/schrodinger/pmw-patched with: cctbx.python setup.py install<br />
Run PyMOL with: cctbx.python -m pymol</div>VitoCalderone