Main Page

From PyMOLWiki
Revision as of 13:01, 7 October 2016 by Speleo3 (talk | contribs) (1.8.4)
Jump to navigation Jump to search
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
Official Release PyMOL v1.8.4 has been released on October 4, 2016.
New Script dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Unset deep

The unset_deep command clears settings on the object, object-state, atom and bond levels.

New in PyMOL 1.8.4

Usage

unset_deep [ settings [, object ]]

Arguments

  • settings = str: space separated list of setting names or empty string for all settings {default: }
  • object = str: name of one object or * for all objects {default: *}

Example

fetch 1rx1, async=0
as cartoon
color green

# object-level
set cartoon_color, blue, 1rx1

# atom-level
set cartoon_color, red, resi 20-30

# clear on all levels
unset_deep cartoon_color

Note

Does currently not unset atom-state level settings.

See Also

A Random PyMOL-generated Cover. See Covers.