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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Fnab

fnab builds nucleic acid entities from sequence. The sequence must be specified in one-letter code. Only one fragment can be created at a type (no spaces allowed unlike the 'fab' command).

Similar functionality is also provided by the graphical Builder in "Nucleic Acid" mode.

New in PyMOL version 2.3

USAGE

fnab input [, name [, type [, form [, dbl_helix ]]]]

ARGUMENTS

  • input = string: Nucleic Acid sequence in one-letter code
  • name = string: name of object to create or modify {default: obj??}
  • mode = string: "DNA" or "RNA" {default: "DNA"}
  • form = string: "A" or "B" {default: "B"}
  • dbl_helix = bool (0/1): flag for using double helix in DNA

EXAMPLE

# Create default (B-DNA) chain
fnab ATGCGATAC

# Create B-DNA chain with specific name 
fnab ATGCGATAC, name=myDNA, mode=DNA, form=B, dbl_helix=1

# Create RNA chain
fnab AAUUUUCCG, mode=RNA

SEE ALSO

A Random PyMOL-generated Cover. See Covers.