Main Page

From PyMOLWiki
Revision as of 23:16, 2 January 2016 by Inchoate (talk | contribs)
Jump to navigation Jump to search
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Cif keepinmemory

The cif_keepinmemory setting is an experimental feature. When loading a CIF file with cif_keepinmemory=on, then the parsed file is kept in memory and made accessible like a dictionary from the Python API.

New in PyMOL 1.7.8

Examples

import pymol

pymol.cmd.set("cif_keepinmemory")
pymol.cmd.fetch("1ubq", type="cif")

citation_titles = pymol.querying.cif_get_array("1ubq", "_citation.title")

import pprint
pprint.pprint(citation_titles)

Output:

['Structure of ubiquitin refined at 1.8 A resolution.',
 'Comparison of the Three-Dimensional Structures of Human, Yeast, and Oat Ubiquitin',
 'Three-Dimensional Structure of Ubiquitin at 2.8 Angstroms Resolution',
 'Crystallization and Preliminary X-Ray Investigation of Ubiquitin, a Non-Histone Chromosomal Protein',
 'Molecular Conservation of 74 Amino Acid Sequence of Ubiquitin between Cattle and Man']
A Random PyMOL-generated Cover. See Covers.