Format bonds
Revision as of 17:22, 9 June 2014 by Andwar (talk | contribs) (Created page with "{{Infobox script-repo |type = Python Module |filename = format_bonds.py |author = Andreas Warnecke |license = BSD-2-Clause }} The script '''format_bon...")
| Type | Python Module |
|---|---|
| Download | format_bonds.py |
| Author(s) | Andreas Warnecke |
| License | BSD-2-Clause |
| This code has been put under version control in the project Pymol-script-repo | |
The script format_bonds will automatically format bonds in amino acids.
Usage
format_bonds [ selection [, bonds ]]
Examples
format_bonds bonds=1
format_bonds bonds=2
format_bonds
import format_bonds
frag PHE
format_bonds
format_bonds bonds=2
Notes
- Remember to correctly configure plugin import (see: Git intro)
- format_bonds will introduce delocalized bonds by default or when bonds is larger than 2.
- Setting bonds=1 will simply disable valence (globally)
- The selection argument is 'all' by default and can be used to restrict editing to selected residues.
- Note that format_bonds will also format acidic residues, the C-terminus, arginine and nitro groups.
- Tip: press the TAB key after entering format bonds to get argument suggestions