Connect mode

From PyMOLWiki
Revision as of 15:08, 23 April 2018 by Pavel (talk | contribs)
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to navigation Jump to search

Overview

Sets how bonds are made when loading a file.

Values:

  • 0 = distance-based (excluding HETATM to HETATM) and CONECT records (default)
  • 1 = CONECT records
  • 2 = distance-based, ignores CONECT records
  • 3 = distance-based (including HETATM to HETATM) and CONECT records
  • 4 = for loading mmCIF: use the chemical components dictionary to look up bonds (in PyMOL 1.7.4, components.cif needs to be present in the current directory, later versions have a subset of the dictionary bundled with PyMOL, and look up unknown residues from a web service)

Syntax

# ignore CONECT records
set connect_mode, 2
# show current setting
get connect_mode

See Also

Load, Connect_cutoff, Connect_bonded