Difference between revisions of "Category:Script Library"
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= Categorized Descriptions = | = Categorized Descriptions = | ||
== [[:Category:UI_Scripts|User Interface]] == | == [[:Category:UI_Scripts|User Interface]] == | ||
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<DPL> | <DPL> | ||
category=UI_Scripts | category=UI_Scripts | ||
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mode=unordered | mode=unordered | ||
</DPL> | </DPL> | ||
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== [[:Category:ObjSel_Scripts|Objects and Selections]] == | == [[:Category:ObjSel_Scripts|Objects and Selections]] == | ||
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<DPL> | <DPL> | ||
category=ObjSel_Scripts | category=ObjSel_Scripts | ||
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mode=unordered | mode=unordered | ||
</DPL> | </DPL> | ||
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== [[:Category:System_Scripts|System (OS/Filesystem/Web/etc)]] == | == [[:Category:System_Scripts|System (OS/Filesystem/Web/etc)]] == | ||
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<DPL> | <DPL> | ||
category=System_Scripts | category=System_Scripts | ||
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mode=unordered | mode=unordered | ||
</DPL> | </DPL> | ||
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== [[:Category:Structural_Biology_Scripts|Structural Biology]] == | == [[:Category:Structural_Biology_Scripts|Structural Biology]] == | ||
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<DPL> | <DPL> | ||
category=System_Scripts | category=System_Scripts | ||
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mode=unordered | mode=unordered | ||
</DPL> | </DPL> | ||
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== [[:Category:ThirdParty_Scripts|Third Party]] == | == [[:Category:ThirdParty_Scripts|Third Party]] == | ||
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<DPL> | <DPL> | ||
category=ThirdParty_Scripts | category=ThirdParty_Scripts | ||
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mode=unordered | mode=unordered | ||
</DPL> | </DPL> | ||
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== [[:Category:Biochemical_Scripts|Biochemical Scripts]] == | == [[:Category:Biochemical_Scripts|Biochemical Scripts]] == | ||
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<DPL> | <DPL> | ||
category=Biochemical_Scripts | category=Biochemical_Scripts | ||
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mode=unordered | mode=unordered | ||
</DPL> | </DPL> | ||
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== [[:Category:Math_Scripts|Math/Geometry/CGO]] == | == [[:Category:Math_Scripts|Math/Geometry/CGO]] == | ||
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<DPL> | <DPL> | ||
category=Math_Scripts | category=Math_Scripts | ||
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mode=unordered | mode=unordered | ||
</DPL> | </DPL> | ||
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[[Category:Scripting|Script Library]] | [[Category:Scripting|Script Library]] | ||
Revision as of 09:25, 30 April 2009
The PyMOLWiki script library houses many useful scripts. Here you will find premade scripts that will extend the power of PyMOL.
The scripts are now categorized based on their function. Someone may have added a script but not listed it on this page, therefore please see the autogenerated list of scripts at the bottom of this page.
Please post any script requests to this page's discussion page. Who knows, someone might have already written it or would be willing to write it.
Depositing Scripts
- Create a new page for your script
- Please provide
- an overview of what the script does
- any usage comments or hints
- the source code
- Please add the following to the bottom of your new page:
[[Category:Script_Library]] [[Category:PUT_SUBCATEGORY_NAME_HERE]]
Categorized Descriptions
User Interface
- Aa codes
- Apropos
- Distancetoatom
- Dynamic mesh
- Format bonds
- Frame slider
- Get colors
- Grepset
- ImmersiveViz
- Inertia tensor
- Key Wait
- Make Figures
- Mouse modes
- Movie color fade
- Movie fade
- Movit
- ObjectByArrows
- ObjectFocus
- PDB Web Services Script
- PowerMate Dial OS X
- Pytms
- Quickdisplays
- RUCAP UM-5
- Save2traj
- Save settings
- Set toggle
- Spectrumbar
- Stereo Figures
- Stereo ray
- VisLoad
Objects and Selections
- AlphaToAll
- Annotate v
- Cluster Count
- CollapseSel
- Color Objects
- Color cbcobj
- ConnectedCloud
- Count molecules in selection
- DistancesRH
- Expand To Surface
- FindObjectsNearby
- FindSurfaceCharge
- FindSurfaceResidues
- Find buried waters
- Findseq
- Flatten obj
- GetNamesInSel
- Get Coordinates I
- Get Coordinates II
- Get raw distances
- Grepsel
- ListSelection2
- List Colors
- List Secondary Structures
- List Selection
- Pairwise distances
- Removealt
- Rotkit
- SaveGroup
- Save sep
- SelInside
- SelectClipped
- Selection Exists
- ShowLigandWaters
- Split Movement
- Split Object Along Axis
- Split selection
- ToGroup
- Zero residues
System (OS/Filesystem/Web/etc)
- FetchLocal
- FilterByMol
- Find symbol
- LoadDir
- Monitor file continuously
- Pdbsurvey
- Pml2py
- Process All Files In Directory
- PythonTerminal
- Read PDB-String
- Tiff2ccp4
- XML-RPC server
Structural Biology
- FetchLocal
- FilterByMol
- Find symbol
- LoadDir
- Monitor file continuously
- Pdbsurvey
- Pml2py
- Process All Files In Directory
- PythonTerminal
- Read PDB-String
- Tiff2ccp4
- XML-RPC server
Third Party
- Ccp4 contact
- Ccp4 ncont
- Ccp4 pisa
- PoseView
- PovRay
- Pymol2glmol
- RUCAP UM-5
- Rasmolify
- Save Mopac
- Tiff2ccp4
- Transform odb
- Wfmesh
Biochemical Scripts
- AAindex
- Average b
- Color cbcobj
- Color h
- CreateAtom
- Cyspka
- DistancesRH
- Distancetoatom
- FindSurfaceCharge
- FindSurfaceResidues
- Forster distance calculator
- ListSelection2
- Load new B-factors
- Pairwise distances
- Polarpairs
- Propka
- Pucker
- Pytms
- Quickdisplays
- Resicolor
- ShowLigandWaters
- Show aromatics
- Show charged
- Show contacts
- Show hydrophilic
- Show hydrophobics
Math/Geometry/CGO
- Axes
- BbPlane
- BiologicalUnit
- BiologicalUnit/Quat
- Bounding Box
- CGO Text
- Cart to frac
- Center of mass
- CgoCircle
- Cgo arrow
- Cgo grid
- Contact Surface
- Cubes
- Distancetoatom
- DrawBoundingBox
- Draw Protein Dimensions
- Dump2CGO
- Ellipsoid
- Mark center
- Modevectors
- Perp maker
- Plane Wizard
- Radius of gyration
- RotationAxis
- Slerpy
- SuperSym
- Supercell
- Symmetry Axis
- TransformSelectionByCameraView
Subcategories
This category has the following 7 subcategories, out of 7 total.
Pages in category "Script Library"
The following 197 pages are in this category, out of 197 total.
C
- CalcArea
- Cart to frac
- Ccp4 contact
- Ccp4 ncont
- Ccp4 pisa
- Cealign plugin
- Center of mass
- Centroid
- Cgo arrow
- Cgo grid
- CGO Text
- CgoCircle
- Check Key
- Cluster Count
- CMPyMOL
- CollapseSel
- Color by conservation
- Color By Mutations
- Color cbcobj
- Color h
- Color Objects
- Colorblindfriendly
- Colorbydisplacement
- ColorByRMSD
- ConnectedCloud
- Consistent View/ Map Inspect
- Contact Surface
- Count molecules in selection
- CreateAtom
- CreateSecondaryStructure
- Cubes
- Cyspka
D
F
J
L
M
P
R
S
- Save Mopac
- Save pdb with anisou
- Save sep
- Save settings
- Save2traj
- SaveGroup
- Ss
- Select sites
- SelectClipped
- Selection Exists
- SelInside
- Set toggle
- Show aromatics
- Show bumps
- Show charged
- Show contacts
- Show hydrophilic
- Show hydrophobics
- Nmr cnstr
- ShowLigandWaters
- Sidechaincenters
- Slerpy
- Spectrum states
- Spectrumany
- Spectrumbar
- Split chains
- Split Movement
- Split Object Along Axis
- Split object
- Split selection
- Sst
- Stereo ray
- Stereo Figures
- Supercell
- SuperSym
- Symmetry Axis