Save sep
From PyMOLWiki
Description
Saves all objects as separate PDB files. Useful if you want to do things like combine separate *.pse files.
Code
from pymol import cmd import glob import re def save_sep(prefix=''): """ save_sep <prefix> saves multiple objects into multiple files using an optional prefix name. e.g. save_sep prefix """ obj_list = cmd.get_names("all") if obj_list: for i in range(len(obj_list)): obj_name = "%s%s.pdb" % (prefix, obj_list[i]) cmd.save(obj_name, obj_list[i]) print "Saving %s" % obj_name else: print "No objects found" cmd.extend('save_sep',save_sep)