Color by conservation
From PyMOLWiki
| Type | Python Script |
|---|---|
| Download | color_by_conservation.py |
| Author(s) | Jason Vertrees |
| License | Free |
| This code has been put under version control in the project Pymol-script-repo | |
Overview
This script reads an alignment object and colors the protein objects in the alignment by the sequence conservation found in the alignment.
Example Usage
reinitialize import color_by_conservation # get some kinases fetch 1opk 3dtc 3p86 2eva 3efw, async=0 # turn on the sequence viewer set seq_view # align them into the "algn" object for x in cmd.get_names(): cmd.align(x, "3efw and c. A", object="algn") # color color_by_conservation aln=algn, as_putty=1
