Main Page

From PyMOLWiki
Revision as of 23:16, 2 January 2016 by Inchoate (talk | contribs)
Jump to navigation Jump to search
Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
New accounts: email jason (dot) vertrees (@) gmail dot com
Quick Links
Tutorials Table of Contents Commands
Script Library Plugins FAQ
Gallery | Covers PyMOL Cheat Sheet (PDF) Getting Help
News & Updates
New Plugin LiSiCA is a new plugin for 2D and 3D ligand based virtual screening using a fast maximum clique algorithm.
Official Release PyMOL v1.8.0 has been released on Nov 18, 2015.
PyMOL Open-Source Fellowship Schrödinger is now accepting applications for the PyMOL Open-Source Fellowship program! Details on http://pymol.org/fellowship
Official Release PyMOL, AxPyMOL, and JyMOL v1.7.6 have all been released on May 4, 2015.
New Plugin PyANM is a new plugin for easier Anisotropic Network Model (ANM) building and visualising in PyMOL.
New Plugin Bondpack is a collection of PyMOL plugins for easy visualization of atomic bonds.
New Plugin MOLE 2.0 is a new plugin for rapid analysis of biomacromolecular channels in PyMOL.
3D using Geforce PyMOL can now be visualized in 3D using Nvidia GeForce video cards (series 400+) with 120Hz monitors and Nvidia 3D Vision, this was previously only possible with Quadro video cards.
Older News See Older News.
Did you know...

Load new B-factors

Type Python Script
Download figshare
Author(s) Pietro Gatti-Lafranconi
License CC BY 4.0

Introduction

Quick and simple script to replace B-factor values in a PDB structure.

New B-factors are provided in an external .txt file, one per line.

By default, the script will also redraw the selected molecule as cartoon putty and colour by B-factor


Usage

loadBfacts mol, [startaa, [source, [visual Y/N]]]


Required Arguments

  • mol = any object selection (within one single object though)


Optional Arguments

  • startaa = number of amino acid the first value in 'source' refers to (default=1)
  • source = name of the file containing new B-factor values (default=newBfactors.txt)
  • visual = redraws structure as cartoon_putty and displays bar with min/max values (default=Y)

Limitations

For its very nature, this script is not ..→

A Random PyMOL-generated Cover. See Covers.