Difference between revisions of "Main Page"

Type	Python Module
Download	https://github.com/speleo3/pymol-psico
Author(s)	Thomas Holder and Steffen Schmidt
License	BSD-2-Clause

Latest revision as of 12:54, 12 March 2024

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Welcome to the PyMOL Wiki!
The community-run support site for the PyMOL molecular viewer.
To request a new account, email SBGrid at: accounts (@) sbgrid dot org

Quick Links
Tutorials	Table of Contents	Commands
Script Library	Plugins	FAQ
Gallery \| Covers	PyMOL Cheat Sheet (PDF)	Getting Help

News & Updates
Official Release	PyMOL v3.0 has been released on March 12, 2024.
New Plugin	CavitOmiX calculate Catalophore™ cavities, predict protein structures with OpenFold by NVIDIA-BioNeMo, ESMFold and retrieve Alphafold models
Official Release	PyMOL v2.5 has been released on May 10, 2021.
Python 3	New Python 3 compatibility guide for scripts and plugins
POSF	New PyMOL fellowship announced for 2022-2023
Tutorial	Plugins Tutorial updated for PyQt5
New Plugin	PICv is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
Selection keywords	New polymer.protein and polymer.nucleic selection keywords. Thanks everyone who participated in the poll!
Plugin Update	MOLE 2.5 is an updated version of channel analysis software in PyMOL
New Script	dssr_block is a wrapper for DSSR (3dna) and creates block-shaped nucleic acid cartoons
Older News	See Older News.

Did you know...

Psico

psico is a python module which extends PyMOL with many commands. It was developed as an in-house script collection, but grew to a quite comprehensive PyMOL extension. Some of the provided commands are already in the PyMOLWiki Script Library, but it contains also many new stuff.

Installation

Using PyMOL 2.0 from the schrodinger anaconda channel:

conda install -c schrodinger pymol
conda install -c speleo3 pymol-psico

Alternatively, copy the psico folder to your PYTHONPATH or use the setup.py based installation.

Usage

To import all commands with one line:

import psico.fullinit

A reference document with all commands can be generated with:

<syntaxhighlight lang="python"> import psico.fullinit impo ..→

A Random PyMOL-generated Cover. See Covers.

@@ Line 29: / Line 29: @@
 |+ style="font-size: 1.4em; font-weight: bold; text-align:left; border-bottom: 2px solid #6678b1;" | News &amp; Updates
 |-
-! Tutorial
+! Official Release
-| [[Plugins Tutorial]] updated for PyQt5
+| [https://pymol.org PyMOL v3.0 has been released] on March 12, 2024.
+|-
+! New Plugin
+| [[CavitOmiX|CavitOmiX]] calculate [https://innophore.com Catalophore™ cavities], predict protein structures with [https://www.nvidia.com/en-us/gpu-cloud/bionemo OpenFold by NVIDIA-BioNeMo], [https://ai.facebook.com/blog/protein-folding-esmfold-metagenomics/ ESMFold] and retrieve [https://www.deepmind.com/research/highlighted-research/alphafold Alphafold] models
 |-
 ! Official Release
-| [https://pymol.org PyMOL v2.2 has been released] on July 24, 2018.
+| [https://pymol.org PyMOL v2.5 has been released] on May 10, 2021.
+|-
+! Python 3
+| New [[2to3|Python 3 compatibility guide]] for scripts and plugins
 |-
 ! POSF
-| [https://pymol.org/fellowship PyMOL Open-Source Fellowship program] accepting applications for 2018-2019
+| [https://pymol.org/fellowship New PyMOL fellowship announced for 2022-2023]
+|-
+! Tutorial
+| [[Plugins Tutorial]] updated for PyQt5
 |-
 ! New Plugin
-| [[ProBiS_H2O|ProBiS H2O]] is a new plugin for identification of conserved waters in protein structures.
+| [[PICv|PICv]] is a new plugin for clustering protein-protein interactions and visualization with available data from PDBe
 |-
 ! Selection keywords

Difference between revisions of "Main Page"

Latest revision as of 12:54, 12 March 2024

Psico

Installation

Usage

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